Notes on H. Naledi Analysis: A. afarensis

Assume that we have downloaded all the files from g-drive, let’s check the A. afarensis data

# get list of the local data files that we prepared earlier
nested_df_of_pp_data <-  
  read_rds(here("analysis", "data", "derived-data", "nested_df_of_pp_data.rds"))

# read these into R, and assign names to each data frame
nested_df_of_pp_data_A_afarensis <- 
  nested_df_of_pp_data %>% 
  filter(str_detect(specimen, "afarensis"))

Let’s try to look at all of them

list_of_plots_A_afarensis  <- 
nested_df_of_pp_data_A_afarensis %>% 
  mutate(plotly = map2(data, specimen, 
                       ~plot_ly(.x,
         x = .x$x, 
         y = .x$y, 
         z = .x$z, 
         color = .x$landmark,
         marker = list(symbol = 'circle'), 
         text = ~paste0("landmark: ", .x$landmark)) %>%
         add_markers() %>% 
  layout(scene = list(xaxis=list(title = .y)))))

htmltools::tagList(list_of_plots_A_afarensis$plotly)